ImageRail is desktop software which performs image analysis on high-throughput microscopy imagery.  It stores single-cell data using SDCubes and offers an adaptive experimental designer.  ImageRail is written in Java and is thus cross-platform, and we provide native application installers for Windows and Mac OS X.

Semantically Typed Data Cube

Semantically Typed Data Cube (SDCube) is a data model, software library, and file format built on top of HDF5 and XML for storing structured numerical data produced by multi-factorial biology experiments.  An SDCube consists of an HDF5 file with groups and datasets created according to the modular, hierarchical SDCube data model, as well as an accompanying XML file containing metadata such as Minimum Information annotations and a description of the experimental factors.&nbsp